COBRA 2015 Program
Detailed Program
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| Wednesday, September 16 | |
| 11:15-13:15 | Registration |
| 13:15-13:30 | Opening Remarks |
| 13:30-18:00 | Session 1: Biotechnology Applications Chair: Markus J. Herrgård, Technical University of Denmark |
| 13:30-14:00 | Vassily Hatzimanikatis, EPFL The Contribution of COBRA to the Design of Synthetic Pathways |
| 14:00-14:30 | Lucía Agudo, Centro de Investigaciones Biológicas Genome-Scale Metabolic Reconstruction and Analysis of Azoarcus Sp. Cib, a Model Bacterium in Anaerobic Degradation of Aromatic Compounds |
| 14:30-15:00 | Isabel Rocha, MIT Portugal Reconciling Experimental Data With in Silico Predictions In Metabolic Engineering Applications |
| 15:00-15:30 | Zhuo Wang, Shanghai Jiao Tong University Integrative Model of Regulation and Metabolism Improves Growth Phenotype Prediction in Saccharomyces Cerevisiae |
| 15:30-16:00 | Coffee Break |
| 16:00-17:00 |
Keynote: Bernhard Palsson, UCSD |
| 17:00-17:30 | Averina Nicolae, Luxembourg Centre for Systems Biomedicine Elementary Flux Analysis and Non-Stationary 13C Fluxomics Combine to Characterise Cytosol-Mitochondria Compartmentalisation in the CHO-K1 Cell Line |
| 17:30-18:00 |
Steffen Klamt, Max Planck Institute for Dynamics of Complex Technical Systems |
| 18:00-20:00 | Welcome Reception and Poster Session I |
| Thursday, September 17 | |
| 9:00-10:00 |
Keynote: Jens Nielsen, Chalmers University |
| 10:00-13:00 | Session 2: Omics and Phenotype Data Integration Chair: Nathan D. Price, Institute for Systems Biology |
| 10:00-10:30 | Uwe Sauer, ETH Zurich Extending Metabolic Networks by in vitro Metabolomics |
| 10:30-11:00 |
Aleksej Zelezniak, Francis Crick Institute and University of Cambridge |
| 11:00-11:30 | Coffee Break |
| 11:30-12:00 | Aarash Bordbar, Sinopia Biosciences Integration of Quantitative Endometabolomics with Genome-Scale Models to Bypass the Steady-State Assumption |
| 12:00-12:30 |
Balazs Papp, Biological Research Centre of the Hungarian Academy of Sciences |
| 12:30-12:45 | Elad Noor, Institute of Molecular Systems Biology The Enzyme Cost of Metabolic Pathway Fluxes |
| 12:45-13:00 | Joana Xavier, University of Minho Universally Essential Cofactors in Prokaryotes |
| 13:00-14:00 | Lunch |
| 14:00-17:00 | Session 3: Biomedical Applications Chair: Ines Thiele, University of Luxembourg Luxembourg |
| 14:00-14:30 | Eytan Ruppin, University of Maryland and Tel Aviv University The Computational Study of Cancer Metabolism: Some Recent Results and Pending Challenges |
| 14:30-15:00 | Alexei Vazquez, Beatson Institute for Cancer Research Quantification of Folate Metabolism Using Transient Metabolic Flux Analysis |
| 15:00-15:30 | Stefania Magnusdottir, University of Luxembourg Data-Driven Refinement of 321 Metabolic Reconstructions Representing the Human Gut Microbiota |
| 15:30-16:00 | Thomas Sauter, University of Luxembourg Integrated Metabolic Modelling Reveals Cell-Type Specific Epigenetic Control Points of the Macrophage Metabolic Network |
| 16:00-16:30 | Coffee Break |
| 16:30-17:00 | Wenzhong Xiao, Mass General Hospital/ Harvard Medical School Personalized Quantitative Metabolic Modeling in the Study of Metabolic Dysfunction after Severe Injury |
| 17:00-22:00 | Heidelberg City Tour and Dinner |
| Friday, September 18 | |
| 9:00-13:00 | Session 4: Models and Algorithms Chair: Tomer Shlomi, Computer Science, Technion IIT, Haifa Israel |
| 9:00-9:30 | Jennifer Reed, University of Wisconsin Application of Algorithms to Identify and Produce Precursors to Commercial Chemicals |
| 9:30-10:00 | David Heckmann, Heinrich Heine University Combining Kinetic and Constraint-Based Models to Predict Evolution of a Complex Photosynthetic Trait |
| 10:00-10:30 | Matthew Biggs, University of Virginia Metabolic Network-Guided Binning of Metagenomic Sequence Fragments |
| 10:30-11:00 | Coffee Break |
| 11:00-11:30 | Michael Balber, Technion IIT Constraint-Based Isotope Tracing (CBIT): Inferring Flux Constraints from Isotopic Tracing Data |
| 11:30-12:00 |
Costas Maranas, Penn State |
| 12:00-12:30 | Elizabeth Brunk, UCSD Systems Biology of the Structural Proteome |
| 12:30-13:30 | Lunch |
| 13:30-15:00 | Poster Session II |
| 15:30-17:30 | Session 5: Multiscale Modelling Chair: Kiran Patil, EMBL |
| 15:30-16:00 | Ines Thiele, University of Luxembourg A Computational Modeling Approach Elucidate Metabolic Interactions between the Gut Microbiota Community and Their Impact on Host Metabolism |
| 16:00-16:30 | Peter Karp, SRI International Modeling Microbial Communities with Metaflux |
| 16:30-17:00 | Daniel Segre, Boston University Spatio-Temporal Modeling of Metabolism in Microbial Communities |
| 17:00-17:30 | Kai Zhuang, Technical University of Denmark Multi-Scale Exploration of the "Metabolism" of a Bio-Based Economy |
| 17:30-18:00 | Poster Awards and Closing Remarks |
